Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015858915.1_cds_XP_016514132.1_26611
CDS Infomation

[gene=LOC107830951] [db_xref=GeneID:107830951] [protein=histone deacetylase 6] [protein_id=XP_016514132.1] [location=join(8320..8868,15639..16079,16186..16328,17292..17382,17462..17604,17934..17988)] [gbkey=CDS]
Sequence

ATGGACTCTTCCACCGTTGACGGCAGCGCGTCGCTTCCATCCACCGGAACCGACGCGAAG
AAGCGCCGTGTCTCATACTTCTACGAGCCCACAATCGGCGACTATTACTACGGGCAAGGT
CACCCAATGAAGCCTCACCGTATACGTATGGCCCACAATCTCATCGTGCACTACTACCTA
CACCGTCGTATGGAAATCAGTCGCCCTTTTCCGGCGGGTCCCGATGACATTCGCCGGTTC
CACTCGCCGGACTACGTCGACTTCCTTTCCTCCGTTTCGCCGGAGACTCTTCATGACCAT
ACCCACGCGCGTCATCTCAAACGCTTCAATGTTGGTGAGGACTGCCCTGTTTTTGATGGG
CTTTTCGGGTTTTGTCAGGCTTCTGCTGGTGGATCTATTGGTGCTGCTGTTAAGCTTAAT
AGGCAAGACGCTGATATAACTATCAACTGGGCCGGTGGGCTCCACCATGCAAAAAAAAGT
GAAGCTTCTGGATTTTGCTATGTCAATGATATTGTTCTCGGTATTCTTGAGCTCCTCAAA
ATCCATAGGCGTGTATTGTATATAGACATTGATATTCACCATGGTGATGGTGTTGAGGAG
GCTTTTTTCACAACGGATAGAGTCATGACAGTGTCTTTCCATAAGTTTGGGGACTTCTTT
CCCGGTACAGGGCATATCAAAGATATTGGTGCAGGTCAAGGGAAATACTATGCCCTAAAT
GTTCCGTTGAATGATGGGATGGACGACGATAGTTTTGGTCGTCTATTTCGTCCCGTAATT
CAAAAAGTCATGGAGGTCTATCAGCCTGATGCTGTCGTTCTTCAATGTGGGGCTGATTCA
CTGGCTGGAGACAGGTTGGGTTGCTTCAATTTGTCTGTCAAGGGCCATGCAGACTGTCTT
AGATTCCTCAGATCTTTCAATGTCCCTCTAATGGTATTGGGTGGTGGAGGTTATACCATA
AGAAATGTTGCGAGGTGCTGGTGCTATGAGACAGCAGTTGCAGTTGGGGTAGAACCCGGA
AATAAATTGCCTTACAATGAATATTTTGAGTATTTTGGCCCAGATTATACTCTTCATGTT
GAACCAAACCCCATGGAGAATAAGAATTCACCCAGGGATCTGGAGAAGATCAGGAACATA
TTGCTTGAGCAACTCTCACAATTACCTCATGCACCTAGTGTGCCATTTCAAACCACTCCT
TCTACAACAGAAGTTCCAGAGGAGGAAGAGGAAGATATGGATCAAAGACCAAAACCACGT
ATATGGAATGGAGAGGATTATGGGTCTGACGCTGATGAAGATGAGCATCCTAGACAACGA
AGTTCAGATAGTAATCTTACTCCAGTCGAAACAACAACTGACATGAGGGATGTCGACGAC
CAAGCCAAAGTAGATGACGACATGGTTGATGCTGATCACTAG

Peptide Sequence

PEP ID

XP_016514132.1
PEP Infomation

PREDICTED: histone deacetylase 6 [Nicotiana tabacum]
Sequence

MDSSTVDGSASLPSTGTDAKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYYL
HRRMEISRPFPAGPDDIRRFHSPDYVDFLSSVSPETLHDHTHARHLKRFNVGEDCPVFDG
LFGFCQASAGGSIGAAVKLNRQDADITINWAGGLHHAKKSEASGFCYVNDIVLGILELLK
IHRRVLYIDIDIHHGDGVEEAFFTTDRVMTVSFHKFGDFFPGTGHIKDIGAGQGKYYALN
VPLNDGMDDDSFGRLFRPVIQKVMEVYQPDAVVLQCGADSLAGDRLGCFNLSVKGHADCL
RFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPGNKLPYNEYFEYFGPDYTLHV
EPNPMENKNSPRDLEKIRNILLEQLSQLPHAPSVPFQTTPSTTEVPEEEEEDMDQRPKPR
IWNGEDYGSDADEDEHPRQRSSDSNLTPVETTTDMRDVDDQAKVDDDMVDADH

Transcript Sequence

Gene sequence data has not been registered.